- Our Recent Papers
Innovation overload! ⚡Hydrodynamically–active oily ocean surface as a cradle for the emergence of life
F Djutanta, R Kha , B Yurke, and RF Hariadi
In preparation
High-speed 3D DNA-PAINT and unsupervised clustering for unlocking 3D DNA origami cryptography
GBM Wisna, D Sukhareva, J Zhao, D Satyabola, M Matthies, S Roy, P Šulc, H Yan, and RF Hariadi
bioRχiv: https://doi.org/10.1101/2023.08.29.555281
I Tengganu, N Karerakattil, S Dey, D Kishnan, and RF Hariadi
In revision
Chemrxiv: https://doi.org/10.26434/chemrxiv-2021-d62p2-v3
2023
Viral attachment blocking chimera composed of DNA origami and nanobody inhibits Pseudorabies Virus infection in vitro
S Pradhan, C Swanson, C Leff, I Tengganu, MH Bergemand, GBM Wisna, IB Hogue, and RF Hariadi
bioRχiv link: https://www.biorxiv.org/content/10.1101/2023.02.13.528373v1
Decoding the hydrodynamic properties of microscale helical propellers from Brownian fluctuations
F Djutanta, P T Brown, B Nainggolan, A Coullomb, S Radhakrishnan, J Sentosa, B Yurke, RF Hariadi*, and DP Shepherd*
PNAS 2023 120 (22) e2220033120
*Authors supervised equally
J Sentosa, F Djutanta, B Horne, D Showkeir, R Rezvani, C Leff, S Pradhan, and RF Hariadi
PLOS ONE 2023 18(7): e0283134.
2022
DNA-templated programmable excitonic wires for micron-scale exciton transport
X Zhou, H Liu, F Djutanta, D Satyabola, S Jiang, X Qi, L Yu, S Lin, RF Hariadi, Y Liu, NW Woodbury, H Yan
Chem 2022 8 (9), 2442-2459
D Gandavadi, and RF Hariadi
Science 2022 375 (6585), 1089-1090
Viral aggregation: The knowns and unknowns
S Pradhan, A Varsani, C Leff, CJ Swanson, and RF Hariadi
Viruses 2022 14 (2), 438
2021
Bench-top fabrication of single-molecule nanoarrays by DNA origami placement
RM Shetty, SR Brady, PWK Rothemund, RF Hariadi*, and A Gopinath*
ACS Nano 2021, 15, 7, 11441–11450
* Authors supervised equally
2019
Autonomous dynamic control of DNA nanostructure self-assembly
L Green, HKK Subramanian, V Mardanlou, J Kim, R F Hariadi, and E Franco,
Nature Chemistry 2019, 11, 510–520
A Bayesian nonparametric approach to single molecule FRET
I Sgouralis, S Madaan, F Djutanta, R Kha , RF Hariadi, and S Pressé
J. Phys Chem B 2019, 123(3), 675-688.
2016
Patterning protein complexes on DNA nanostructures using a GFP nanobody
RF Sommese, RF Hariadi, K Kim, M Liu, MJ Tyska, and S Sivaramakrishnan
Protein Science 2016 25 (11), 2089-2094
Engineering circular gliding of actin filaments along myosin-patterned DNA nanotube rings to study long-term actin–myosin behaviors.
RF Hariadi, AJ Appukutty, and S Sivaramakrishnan
ACS Nano 2016 10 (9), 8281-8288
A coarse-grained model of DNA nanotube population growth
V Mardanlou, LN Green, HKK Subramanian, RF Hariadi, J Kim, and E Franco
DNA Computing and Molecular Programming: 22nd International Conference 2016
Before employment at ASU
2015
Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics
RF Hariadi, E Winfree, B Yurke
PNAS 2015 112 (45), E6086-E6095
Using protein dimers to maximize the protein hybridization efficiency with multisite DNA origami scaffolds
V Verma, L Mallik, RF Hariadi, S Sivaramakrishnan, G Skiniotis, and AP Joglekar
PLOS ONE 2015 10 (9), e0137125
Mechanical coordination in motor ensembles revealed using engineered artificial myosin filaments
RF Hariadi, RF Sommese, AS Adhikari, RE Taylor, S Sutton, JA Spudich, and S Sivaramakrishnan
Nature Nanotechnology 2015 10 (8), 696–700
Cellular chirality arising from the self-organization of the actin cytoskeleton
YH Tee, T Shemesh, V Thiagarajan, RF Hariadi, KL Anderson, C Page, ...
Nature Cell Biology 2015 17 (4), 445-457
Tuning myosin-driven sorting on cellular actin networks
RF Hariadi, RF Sommese, and S Sivaramakrishnan
Elife 2015 4, e05472
BAM! POW!
Our Science
Innovation overload! ⚡Biomolecular Mechanics
"Everything in biology is mechanical." – Julio Fernandez
The overarching research objective of the BIONICS LAB is to uncover the fundamental physical forces that govern how cells generate, detect, and respond to mechanical forces at the molecular level. We have developed a set of DNA nanotechnology, super-resolution microscopy, biophysics, protein engineering and molecular analytic tools that empower us to achieve our goals.
Biomolecular Nanotechnology
"What I cannot create, I do not understand." – Richard Feynman
Our lab is using DNA nanostructures to reconstruct mechanically-functional biomolecular systems while capturing their spatial and mechanical contexts.
These biologically, spatially, and mechanically-relevant reconstituted systems are amenable to mathematically-rigorous, physically-sound, and highly-predictive modeling.
The Mechanobiology of Malaria Parasite Invasion
The initial theme of our lab will focus on the mechanical interactions that power and guide malaria parasite invasion. Malaria, an infectious disease caused by deadly Plasmodium parasites, is a global health concern. In 2013, malaria was responsible for ~200 million cases and claimed >500,000 lives, which is equivalent to ~1 death per minute.
Low-Cost Single Molecule Nanoarray for Democratizing Digital Diagnostics
Finally, our lab will put this knowledge to work. From the biomedical translational standpoint, we will also develop lithography-free cm-scale DNA origami nanoarrays for high-throughput single-molecule biophysics and low-cost digital diagnostics that target minuscule concentrations of biomarkers.
The origins of life
"All of us who study the origin of life find that the more we look into it, the more we feel it is too complex to have evolved anywhere." – Harold Urey
The most fundamental principle of the living system could have been concealed within the secret recipe to initiate life itself. Our lab combines various branches of science from organic chemistry, fluid mechanics, into geophysics and astrophysics to develop and test a protocell model that emerged from hydrodynamic forces acting on oil slicks trapped by an ancient ocean gyre. The oil slicks are light and water-insoluble organic materials made out of micrometeorite kerogen.
Our family of Bionauts ⚡
Ranjan
Sasmal 🇮🇳Postdoctoral scholar
Ph.D. – Jawaharlal Nehru Centre for Advanced Scientific Research, India
Prathamesh
Chopade 🇮🇳
Postdoctoral scholar
Ph.D. – Sungyukwan University
Deepak
Karna🇳🇵
Postdoctoral scholar
Ph.D. – Kent State University
Gde Bimananda Mahardika Wisna 🇮🇩
Graduate student
ASU – Physics
Youssef
Hassan 🇺🇸
Undergraduate Researcher
ASU – Biochemistry
Sri Ujjwal Reddy Beereddy 🇮🇳
Undergraduate Researcher
ASU – Computer Science
Rayhan
Rizqi 🇮🇩
Undergraduate Researcher
ASU – Computer Science
Aaron
Sakai 🇺🇸
Undergraduate Researcher
ASU
Jae Woo
Jeong 🇺🇸
Undergraduate Researcher
ASU – Physics
Prananti
Chintada 🇺🇸
Highschool Researcher
BASIS Chandler
Anshum
Patel 🇺🇸
Highschool Researcher
BASIS Chandler
Collaborators ⚡
Xu Wang
ASU
Po-Lin Chiu
ASU
"Bernie" Yurke
Boise State University
Jong Seto
ASU
Hao Yan
ASU
"Lab life" = "Eat, sleep & innovate"
We celebrate everyone's birthday and our successes with papers, grants, and life events.
Get in touch!
Email or drop us a note below
Where we are
The Biodesign Institute A (BDA), Arizona State University
Copyright © 2020 Rizal Hariadi. All rights reserved.